SNPlinks: PCR Primer Design Tools


http://www.molbiol.bbsrc.ac.uk/reviews.html 
Reviews of primer design programs
REPEAT MASKER http://ftp.genome.washington.edu/cgi-bin/RepeatMasker
Screening for interspersed repeats and low complexity DNA sequences
PRIMER 3 http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi
Primer design program with easy to use interface and good help pages
http://biotools.idtdna.com/gateway/ 
Primer and probe design tool, secondary structure prediction and comprehensive oligo analysis
http://www.zaik.uni-koeln.de/AFS/Projects/Bioinformatics/sbeprimer.html
Primer design program for multiplex SBE-based genotyping

Juan Sanchez 06.03.2004